v1.1.1#

MuSpAn v1.1.1 is a minor release that includes bug fixes and dependency updates. This release is compatible with Python 3.10 and above.

Optimisations#

  • Improved computational efficiency for loading Xenium data using the Xenium_to_domain function.

  • Floating point errors in shape operations has been resolved.

Bug Fixes#

  • [#12] Fixed Type assertion error in xenium_to_domain.

  • domain_to_csv: indexing error corrected.

  • generate_hexgrid and generate_quadrats: categortical type assertion to string when counting labels in regions.

  • Update NetworkX dependency to version 3.4 for compatibility with Python 3.13.

  • Dropped numpy 2.0.0 contstraint as Simplification dependency is no longer required.

  • switched matplotlib.pylot.cm.get_cmap to matplotlib.pyplot.get_cmap for compatibility with matplotlib 3.9.0.

All tutorials have been updated to reflect the changes in version v1.1.1. We appreciate all contributions and feedback that helped shape this release!

For further details, refer to the documentation and upgrade guide.

Thank you for using our software!

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