muspan.io

The muspan.io module provides tools for reading and writing data to and from the MuSpAn package. This module includes the following submodules:

MuSpAn domain input/output

save_domain	Save a domain object to a file.
load_domain	Load a domain object from a file.
domain_to_csv	Export a domain object as a CSV file.

Helper input methods for specific platforms

qupath_to_domain	Import a QuPath GeoJSON file to a muspan domain.
xenium_to_domain	The function will take a xenium dataset and produce a muspan domain loaded with cell and transcript objects from an xenium output.
spatialdata_to_domain	Import a SpatialData object as a MuSpAn domain.